IL_4V4G_736

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CAC*GCAG

Length

7 nucleotides

Bulged bases

4V4G|1|FA|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_736 not in the Motif Atlas

Homologous match to IL_7A0S_112

Geometric discrepancy: 0.5665

The information below is about IL_7A0S_112

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

4V4G|1|FA|C|19
4V4G|1|FA|A|20
4V4G|1|FA|C|21
*
4V4G|1|FA|G|66
4V4G|1|FA|C|67
4V4G|1|FA|A|68
4V4G|1|FA|G|69

Current chains

Chain FA

5S RIBOSOMAL RNA

Nearby chains

Chain FB

Large subunit ribosomal RNA; LSU rRNA

Chain FW

general stress protein Ctc