IL_4V4G_758

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4V4G|1|FB|U|2470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4G_758 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.5239

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

4V4G|1|FB|A|2438
4V4G|1|FB|U|2439
4V4G|1|FB|C|2440
*
4V4G|1|FB|G|2468
4V4G|1|FB|G|2469
4V4G|1|FB|U|2470
4V4G|1|FB|U|2471
4V4G|1|FB|U|2472

Current chains

Chain FB

23S RIBOSOMAL RNA

Nearby chains

Chain FN

50S ribosomal protein L16