IL_4V4G_838
3D structure
- PDB id
- 4V4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 11.5 Å
Loop
- Sequence
- GGUUAAGGAUGUGUCG*CGAUGCGCCGAAAAUGAUCGGGGC
- Length
- 40 nucleotides
- Bulged bases
- 4V4G|1|JB|G|1036, 4V4G|1|JB|A|1039, 4V4G|1|JB|U|1044, 4V4G|1|JB|A|1138, 4V4G|1|JB|U|1141, 4V4G|1|JB|G|1142, 4V4G|1|JB|A|1143, 4V4G|1|JB|U|1144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4G|1|JB|G|1035
4V4G|1|JB|G|1036
4V4G|1|JB|U|1037
4V4G|1|JB|U|1038
4V4G|1|JB|A|1039
4V4G|1|JB|A|1040
4V4G|1|JB|G|1041
4V4G|1|JB|G|1042
4V4G|1|JB|A|1043
4V4G|1|JB|U|1044
4V4G|1|JB|G|1045
4V4G|1|JB|U|1046
4V4G|1|JB|G|1047
4V4G|1|JB|U|1048
4V4G|1|JB|C|1049
4V4G|1|JB|G|1050
*
4V4G|1|JB|C|1127
4V4G|1|JB|G|1128
4V4G|1|JB|A|1129
4V4G|1|JB|U|1130
4V4G|1|JB|G|1131
4V4G|1|JB|C|1132
4V4G|1|JB|G|1133
4V4G|1|JB|C|1134
4V4G|1|JB|C|1135
4V4G|1|JB|G|1136
4V4G|1|JB|A|1137
4V4G|1|JB|A|1138
4V4G|1|JB|A|1139
4V4G|1|JB|A|1140
4V4G|1|JB|U|1141
4V4G|1|JB|G|1142
4V4G|1|JB|A|1143
4V4G|1|JB|U|1144
4V4G|1|JB|C|1145
4V4G|1|JB|G|1146
4V4G|1|JB|G|1147
4V4G|1|JB|G|1148
4V4G|1|JB|G|1149
4V4G|1|JB|C|1150
Current chains
- Chain JB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain J6
- 50S ribosomal protein L36
- Chain JA
- 5S ribosomal RNA; 5S rRNA
- Chain JE
- 50S ribosomal protein L3
- Chain JH
- 50S ribosomal protein L6
- Chain JK
- 50S ribosomal protein L13
- Chain JN
- 50S ribosomal protein L16
- Chain JW
- general stress protein Ctc
Coloring options: