3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
GGUUAAGGAUGUGUCG*CGAUGCGCCGAAAAUGAUCGGGGC
Length
40 nucleotides
Bulged bases
4V4G|1|JB|G|1036, 4V4G|1|JB|A|1039, 4V4G|1|JB|U|1044, 4V4G|1|JB|A|1138, 4V4G|1|JB|U|1141, 4V4G|1|JB|G|1142, 4V4G|1|JB|A|1143, 4V4G|1|JB|U|1144
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4G|1|JB|G|1035
4V4G|1|JB|G|1036
4V4G|1|JB|U|1037
4V4G|1|JB|U|1038
4V4G|1|JB|A|1039
4V4G|1|JB|A|1040
4V4G|1|JB|G|1041
4V4G|1|JB|G|1042
4V4G|1|JB|A|1043
4V4G|1|JB|U|1044
4V4G|1|JB|G|1045
4V4G|1|JB|U|1046
4V4G|1|JB|G|1047
4V4G|1|JB|U|1048
4V4G|1|JB|C|1049
4V4G|1|JB|G|1050
*
4V4G|1|JB|C|1127
4V4G|1|JB|G|1128
4V4G|1|JB|A|1129
4V4G|1|JB|U|1130
4V4G|1|JB|G|1131
4V4G|1|JB|C|1132
4V4G|1|JB|G|1133
4V4G|1|JB|C|1134
4V4G|1|JB|C|1135
4V4G|1|JB|G|1136
4V4G|1|JB|A|1137
4V4G|1|JB|A|1138
4V4G|1|JB|A|1139
4V4G|1|JB|A|1140
4V4G|1|JB|U|1141
4V4G|1|JB|G|1142
4V4G|1|JB|A|1143
4V4G|1|JB|U|1144
4V4G|1|JB|C|1145
4V4G|1|JB|G|1146
4V4G|1|JB|G|1147
4V4G|1|JB|G|1148
4V4G|1|JB|G|1149
4V4G|1|JB|C|1150

Current chains

Chain JB
23S RIBOSOMAL RNA

Nearby chains

Chain J6
50S ribosomal protein L36
Chain JA
5S ribosomal RNA; 5S rRNA
Chain JE
50S ribosomal protein L3
Chain JH
50S ribosomal protein L6
Chain JK
50S ribosomal protein L13
Chain JN
50S ribosomal protein L16
Chain JW
general stress protein Ctc

Coloring options:

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