3D structure

PDB id
4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method
X-RAY DIFFRACTION
Resolution
11.5 Å

Loop

Sequence
UAUAG*CGGGUA
Length
11 nucleotides
Bulged bases
4V4G|1|JB|G|2217
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4G_844 not in the Motif Atlas
Geometric match to IL_4WFL_001
Geometric discrepancy: 0.362
The information below is about IL_4WFL_001
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4V4G|1|JB|U|2062
4V4G|1|JB|A|2063
4V4G|1|JB|U|2064
4V4G|1|JB|A|2065
4V4G|1|JB|G|2066
*
4V4G|1|JB|C|2215
4V4G|1|JB|G|2216
4V4G|1|JB|G|2217
4V4G|1|JB|G|2218
4V4G|1|JB|U|2219
4V4G|1|JB|A|2220

Current chains

Chain JB
23S RIBOSOMAL RNA

Nearby chains

Chain J1
50S ribosomal protein L31
Chain JD
50S ribosomal protein L2

Coloring options:


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