3D structure

PDB id
4V4H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
GGU*ACAC
Length
7 nucleotides
Bulged bases
4V4H|1|AA|A|1227
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4H_045 not in the Motif Atlas
Geometric match to IL_5ML7_010
Geometric discrepancy: 0.3472
The information below is about IL_5ML7_010
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_68118.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
27

Unit IDs

4V4H|1|AA|G|953
4V4H|1|AA|G|954
4V4H|1|AA|U|955
*
4V4H|1|AA|A|1225
4V4H|1|AA|C|1226
4V4H|1|AA|A|1227
4V4H|1|AA|C|1228

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

Chain AM
30S RIBOSOMAL PROTEIN S13
Chain AS
30S RIBOSOMAL PROTEIN S19

Coloring options:


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