IL_4V4H_096

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_096 not in the Motif Atlas

Homologous match to IL_4WF9_028

Geometric discrepancy: 0.0963

The information below is about IL_4WF9_028

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

4V4H|1|BB|C|837
4V4H|1|BB|C|838
*
4V4H|1|BB|G|940
4V4H|1|BB|A|941
4V4H|1|BB|G|942

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L35

Chain BL

50S RIBOSOMAL PROTEIN L15