IL_4V4H_101

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

4V4H|1|BB|G|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_101 not in the Motif Atlas

Geometric match to IL_5J7L_271

Geometric discrepancy: 0.1716

The information below is about IL_5J7L_271

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4V4H|1|BB|G|862
4V4H|1|BB|A|863
*
4V4H|1|BB|U|913
4V4H|1|BB|G|914
4V4H|1|BB|C|915

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BM

50S RIBOSOMAL PROTEIN L16

Chain BW

50S RIBOSOMAL PROTEIN L27