IL_4V4H_196

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_196 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.1506

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

4V4H|1|CA|A|371
4V4H|1|CA|C|372
4V4H|1|CA|A|373
4V4H|1|CA|A|374
4V4H|1|CA|U|375
*
4V4H|1|CA|A|389
4V4H|1|CA|U|390

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CP

30S RIBOSOMAL PROTEIN S16