IL_4V4H_236

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_236 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1384

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V4H|1|CA|C|1259
4V4H|1|CA|G|1260
4V4H|1|CA|A|1261
4V4H|1|CA|C|1262
4V4H|1|CA|C|1263
*
4V4H|1|CA|G|1272
4V4H|1|CA|C|1273
4V4H|1|CA|A|1274
4V4H|1|CA|A|1275
4V4H|1|CA|G|1276

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S14