IL_4V4H_241

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4V4H|1|CA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_241 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2847

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4V4H|1|CA|C|1407
4V4H|1|CA|A|1408
4V4H|1|CA|C|1409
*
4V4H|1|CA|G|1491
4V4H|1|CA|A|1492
4V4H|1|CA|A|1493
4V4H|1|CA|G|1494

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain DB

Large subunit ribosomal RNA; LSU rRNA