IL_4V4H_257

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_257 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.0695

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V4H|1|DB|G|188
4V4H|1|DB|G|189
4V4H|1|DB|A|190
4V4H|1|DB|A|191
4V4H|1|DB|C|192
4V4H|1|DB|U|193
4V4H|1|DB|G|194
*
4V4H|1|DB|C|201
4V4H|1|DB|U|202
4V4H|1|DB|A|203
4V4H|1|DB|A|204
4V4H|1|DB|G|205
4V4H|1|DB|U|206
4V4H|1|DB|A|207
4V4H|1|DB|C|208

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DL

50S RIBOSOMAL PROTEIN L15

Chain DZ

50S RIBOSOMAL PROTEIN L31