IL_4V4H_291

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

4V4H|1|DB|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_291 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.3047

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

4V4H|1|DB|G|1087
4V4H|1|DB|A|1088
4V4H|1|DB|A|1089
4V4H|1|DB|A|1090
*
4V4H|1|DB|U|1101
4V4H|1|DB|C|1102

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DG

50S RIBOSOMAL PROTEIN L6

Chain DI

50S RIBOSOMAL PROTEIN L11