IL_4V4H_313

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V4H|1|DB|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_313 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0754

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V4H|1|DB|C|1686
4V4H|1|DB|G|1687
4V4H|1|DB|U|1688
4V4H|1|DB|A|1689
4V4H|1|DB|A|1690
4V4H|1|DB|C|1691
*
4V4H|1|DB|G|1696
4V4H|1|DB|G|1697
4V4H|1|DB|A|1698
4V4H|1|DB|G|1699
4V4H|1|DB|A|1700
4V4H|1|DB|A|1701
4V4H|1|DB|G|1702

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DC

50S RIBOSOMAL PROTEIN L2