IL_4V4H_353

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

4V4H|1|DB|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4H_353 not in the Motif Atlas

Homologous match to IL_4WF9_106

Geometric discrepancy: 0.0836

The information below is about IL_4WF9_106

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

4V4H|1|DB|G|2838
4V4H|1|DB|G|2839
*
4V4H|1|DB|U|2878
4V4H|1|DB|A|2879
4V4H|1|DB|C|2880

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain DN

50S RIBOSOMAL PROTEIN L17

Chain DP

50S RIBOSOMAL PROTEIN L19