IL_4V4Q_022
3D structure
- PDB id
- 4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- 4V4Q|1|AA|U|485
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4Q_022 not in the Motif Atlas
- Homologous match to IL_5J7L_022
- Geometric discrepancy: 0.078
- The information below is about IL_5J7L_022
- Detailed Annotation
- tSH-tHW-tWW
- Broad Annotation
- No text annotation
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V4Q|1|AA|G|446
4V4Q|1|AA|G|447
4V4Q|1|AA|A|448
4V4Q|1|AA|G|449
4V4Q|1|AA|G|450
*
4V4Q|1|AA|C|483
4V4Q|1|AA|G|484
4V4Q|1|AA|U|485
4V4Q|1|AA|U|486
4V4Q|1|AA|A|487
4V4Q|1|AA|C|488
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AD
- 30S ribosomal protein S4
- Chain AP
- 30S ribosomal protein S16
Coloring options: