IL_4V4Q_026

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

AAG*CU

Length

5 nucleotides

Bulged bases

4V4Q|1|AA|A|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Q_026 not in the Motif Atlas

Geometric match to IL_5FJC_001

Geometric discrepancy: 0.2659

The information below is about IL_5FJC_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V4Q|1|AA|A|460
4V4Q|1|AA|A|461
4V4Q|1|AA|G|462
*
4V4Q|1|AA|C|470
4V4Q|1|AA|U|471

Current chains

Chain AA

16S ribosomal RNA

Nearby chains