IL_4V4Q_063

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CACA*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Q_063 not in the Motif Atlas

Geometric match to IL_8C3A_473

Geometric discrepancy: 0.2702

The information below is about IL_8C3A_473

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

4V4Q|1|AA|C|1407
4V4Q|1|AA|A|1408
4V4Q|1|AA|C|1409
4V4Q|1|AA|A|1410
*
4V4Q|1|AA|U|1490
4V4Q|1|AA|G|1491
4V4Q|1|AA|A|1492
4V4Q|1|AA|A|1493
4V4Q|1|AA|G|1494

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain BB

Large subunit ribosomal RNA; LSU rRNA