3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
4V4Q|1|BB|A|504, 4V4Q|1|BB|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4Q_084 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.0941
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

4V4Q|1|BB|G|481
4V4Q|1|BB|A|482
4V4Q|1|BB|A|483
4V4Q|1|BB|C|484
*
4V4Q|1|BB|G|496
4V4Q|1|BB|A|497
4V4Q|1|BB|G|498
4V4Q|1|BB|U|499
4V4Q|1|BB|G|500
4V4Q|1|BB|A|501
4V4Q|1|BB|A|502
4V4Q|1|BB|A|503
4V4Q|1|BB|A|504
4V4Q|1|BB|A|505
4V4Q|1|BB|G|506
4V4Q|1|BB|A|507
4V4Q|1|BB|A|508
4V4Q|1|BB|C|509

Current chains

Chain BB
23S ribosomal RNA

Nearby chains

Chain BS
50S ribosomal protein L22
Chain BU
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5528 s