IL_4V4Q_096

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

4V4Q|1|BB|U|846, 4V4Q|1|BB|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Q_096 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.4311

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

4V4Q|1|BB|A|844
4V4Q|1|BB|A|845
4V4Q|1|BB|U|846
4V4Q|1|BB|U|847
4V4Q|1|BB|C|848
*
4V4Q|1|BB|G|930
4V4Q|1|BB|U|931
4V4Q|1|BB|U|932
4V4Q|1|BB|A|933
4V4Q|1|BB|U|934

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BY

50S ribosomal protein L30