3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
4V4Q|1|BB|A|2602
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4Q_167 not in the Motif Atlas
Homologous match to IL_5J7L_344
Geometric discrepancy: 0.1991
The information below is about IL_5J7L_344
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
132

Unit IDs

4V4Q|1|BB|C|2591
4V4Q|1|BB|G|2592
*
4V4Q|1|BB|C|2601
4V4Q|1|BB|A|2602
4V4Q|1|BB|G|2603

Current chains

Chain BB
23S ribosomal RNA

Nearby chains

Chain BC
50S ribosomal protein L2

Coloring options:


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