IL_4V4Q_205

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V4Q|1|CA|A|532, 4V4Q|1|CA|U|534, 4V4Q|1|CA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29931.1

Basepair signature

cWW-R-R-tWH-cSW-L-R-R-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V4Q|1|CA|G|515
4V4Q|1|CA|U|516
4V4Q|1|CA|G|517
4V4Q|1|CA|C|518
4V4Q|1|CA|C|519
4V4Q|1|CA|A|520
4V4Q|1|CA|G|521
*
4V4Q|1|CA|C|528
4V4Q|1|CA|G|529
4V4Q|1|CA|G|530
4V4Q|1|CA|U|531
4V4Q|1|CA|A|532
4V4Q|1|CA|A|533
4V4Q|1|CA|U|534
4V4Q|1|CA|A|535
4V4Q|1|CA|C|536

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain CC

30S ribosomal protein S3

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12