IL_4V4Q_214

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

AGAAUU*AGGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54301.1

Basepair signature

cWW-cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

4V4Q|1|CA|A|673
4V4Q|1|CA|G|674
4V4Q|1|CA|A|675
4V4Q|1|CA|A|676
4V4Q|1|CA|U|677
4V4Q|1|CA|U|678
*
4V4Q|1|CA|A|712
4V4Q|1|CA|G|713
4V4Q|1|CA|G|714
4V4Q|1|CA|A|715
4V4Q|1|CA|A|716
4V4Q|1|CA|U|717

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CF

30S ribosomal protein S6

Chain CK

30S ribosomal protein S11

Chain CR

30S ribosomal protein S18

Chain CU

30S ribosomal protein S21

Chain DC

50S ribosomal protein L2