3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4Q_256 not in the Motif Atlas
Geometric match to IL_5J7L_250
Geometric discrepancy: 0.0709
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4V4Q|1|DB|G|188
4V4Q|1|DB|G|189
4V4Q|1|DB|A|190
4V4Q|1|DB|A|191
4V4Q|1|DB|C|192
4V4Q|1|DB|U|193
4V4Q|1|DB|G|194
*
4V4Q|1|DB|C|201
4V4Q|1|DB|U|202
4V4Q|1|DB|A|203
4V4Q|1|DB|A|204
4V4Q|1|DB|G|205
4V4Q|1|DB|U|206
4V4Q|1|DB|A|207
4V4Q|1|DB|C|208

Current chains

Chain DB
23S ribosomal RNA

Nearby chains

Chain DL
50S ribosomal protein L15
Chain DZ
50S ribosomal protein L31

Coloring options:


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