IL_4V4Q_280

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

4V4Q|1|DB|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Q_280 not in the Motif Atlas

Homologous match to IL_7A0S_032

Geometric discrepancy: 0.12

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

4V4Q|1|DB|C|994
4V4Q|1|DB|C|995
4V4Q|1|DB|A|996
*
4V4Q|1|DB|U|1159
4V4Q|1|DB|G|1160

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21

Chain DY

50S ribosomal protein L30