3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
GAAA*UC
Length
6 nucleotides
Bulged bases
4V4Q|1|DB|A|1088
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4Q_290 not in the Motif Atlas
Homologous match to IL_6PRV_002
Geometric discrepancy: 0.2517
The information below is about IL_6PRV_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4Q|1|DB|G|1087
4V4Q|1|DB|A|1088
4V4Q|1|DB|A|1089
4V4Q|1|DB|A|1090
*
4V4Q|1|DB|U|1101
4V4Q|1|DB|C|1102

Current chains

Chain DB
23S ribosomal RNA

Nearby chains

Chain D4
50S ribosomal protein L36
Chain DG
50S ribosomal protein L6
Chain DI
50S ribosomal protein L11

Coloring options:


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