3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
UUG*UG
Length
5 nucleotides
Bulged bases
4V4Q|1|DB|U|2203
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4Q_332 not in the Motif Atlas
Homologous match to IL_5J7L_331
Geometric discrepancy: 0.0814
The information below is about IL_5J7L_331
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

4V4Q|1|DB|U|2202
4V4Q|1|DB|U|2203
4V4Q|1|DB|G|2204
*
4V4Q|1|DB|U|2220
4V4Q|1|DB|G|2221

Current chains

Chain DB
23S ribosomal RNA

Nearby chains

Chain DC
50S ribosomal protein L2

Coloring options:


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