IL_4V4R_001

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

UGCGAGAA*UUA

Length

11 nucleotides

Bulged bases

4V4R|1|AA|G|31

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4R_001 not in the Motif Atlas

Geometric match to IL_7A0S_020

Geometric discrepancy: 0.2615

The information below is about IL_7A0S_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V4R|1|AA|U|30
4V4R|1|AA|G|30|||A
4V4R|1|AA|C|30|||B
4V4R|1|AA|G|30|||C
4V4R|1|AA|A|30|||D
4V4R|1|AA|G|31
4V4R|1|AA|A|32
4V4R|1|AA|A|33
*
4V4R|1|AA|U|551
4V4R|1|AA|U|552
4V4R|1|AA|A|553

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12