3D structure

PDB id
4V4R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the whole ribosomal complex.
Experimental method
X-RAY DIFFRACTION
Resolution
5.9 Å

Loop

Sequence
CGGCCAACU*AGG
Length
12 nucleotides
Bulged bases
4V4R|1|AA|C|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4R_020 not in the Motif Atlas
Geometric match to IL_4V88_470
Geometric discrepancy: 0.2818
The information below is about IL_4V88_470
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

4V4R|1|AA|C|504
4V4R|1|AA|G|505
4V4R|1|AA|G|506
4V4R|1|AA|C|507
4V4R|1|AA|C|508
4V4R|1|AA|A|509
4V4R|1|AA|A|510
4V4R|1|AA|C|511
4V4R|1|AA|U|512
*
4V4R|1|AA|A|539
4V4R|1|AA|G|540
4V4R|1|AA|G|541

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AE
30S ribosomal protein S5
Chain AL
30S ribosomal protein S12

Coloring options:


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