IL_4V4T_041
3D structure
- PDB id
- 4V4T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.46 Å
Loop
- Sequence
- CG*CUG
- Length
- 5 nucleotides
- Bulged bases
- 4V4T|1|AA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4T_041 not in the Motif Atlas
- Homologous match to IL_4LFB_046
- Geometric discrepancy: 0.3765
- The information below is about IL_4LFB_046
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
4V4T|1|AA|C|1060
4V4T|1|AA|G|1061
*
4V4T|1|AA|C|1195
4V4T|1|AA|U|1196
4V4T|1|AA|G|1197
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AE
- 30S ribosomal protein S5
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AN
- 30S ribosomal protein S14
- Chain AX
- 5'-D(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3'
Coloring options: