IL_4V4T_064

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4T_064 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.1676

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V4T|1|BA|G|188
4V4T|1|BA|G|189
4V4T|1|BA|A|190
4V4T|1|BA|A|191
4V4T|1|BA|C|192
4V4T|1|BA|U|193
4V4T|1|BA|G|194
*
4V4T|1|BA|C|201
4V4T|1|BA|U|202
4V4T|1|BA|C|203
4V4T|1|BA|A|204
4V4T|1|BA|G|205
4V4T|1|BA|U|206
4V4T|1|BA|A|207
4V4T|1|BA|C|208

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L31

Chain B7

50S ribosomal protein L34