IL_4V4T_078
3D structure
- PDB id
- 4V4T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.46 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4T_078 not in the Motif Atlas
- Homologous match to IL_7A0S_029
- Geometric discrepancy: 0.3183
- The information below is about IL_7A0S_029
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.1
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
4V4T|1|BA|G|864
4V4T|1|BA|C|865
4V4T|1|BA|A|866
4V4T|1|BA|C|867
4V4T|1|BA|U|868
*
4V4T|1|BA|A|909
4V4T|1|BA|A|910
4V4T|1|BA|A|911
4V4T|1|BA|C|912
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BQ
- 50S ribosomal protein L16
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