IL_4V4T_084

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4T_084 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.2467

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

4V4T|1|BA|C|1004
4V4T|1|BA|C|1005
4V4T|1|BA|C|1006
4V4T|1|BA|C|1007
4V4T|1|BA|C|1008
4V4T|1|BA|A|1009
4V4T|1|BA|A|1010
4V4T|1|BA|G|1011
*
4V4T|1|BA|C|1150
4V4T|1|BA|G|1151

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20