IL_4V4T_096

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

GUGAAG*CGUAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4T_096 not in the Motif Atlas

Geometric match to IL_1LNT_002

Geometric discrepancy: 0.3825

The information below is about IL_1LNT_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V4T|1|BA|G|1356
4V4T|1|BA|U|1357
4V4T|1|BA|G|1358
4V4T|1|BA|A|1359
4V4T|1|BA|A|1360
4V4T|1|BA|G|1361
*
4V4T|1|BA|C|1370
4V4T|1|BA|G|1371
4V4T|1|BA|U|1372
4V4T|1|BA|A|1373
4V4T|1|BA|G|1374
4V4T|1|BA|C|1375

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L31

Chain B7

50S ribosomal protein L34