IL_4V4T_144

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

GUGAAAGAC*GGGGAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|AA|G|604
4V4T|1|AA|U|605
4V4T|1|AA|G|606
4V4T|1|AA|A|607
4V4T|1|AA|A|608
4V4T|1|AA|A|609
4V4T|1|AA|G|610
4V4T|1|AA|A|611
4V4T|1|AA|C|612
*
4V4T|1|AA|G|628
4V4T|1|AA|G|629
4V4T|1|AA|G|630
4V4T|1|AA|G|631
4V4T|1|AA|A|632
4V4T|1|AA|G|633
4V4T|1|AA|C|634

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AH

30S ribosomal protein S8

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17