IL_4V4T_150

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

UCGGACACCGAAUCC*GGAUAGGUGA

Length

25 nucleotides

Bulged bases

4V4T|1|BA|G|275, 4V4T|1|BA|A|276, 4V4T|1|BA|C|277, 4V4T|1|BA|G|281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|BA|U|273|||E
4V4T|1|BA|C|273|||F
4V4T|1|BA|G|274
4V4T|1|BA|G|275
4V4T|1|BA|A|276
4V4T|1|BA|C|277
4V4T|1|BA|A|278
4V4T|1|BA|C|279
4V4T|1|BA|C|280
4V4T|1|BA|G|281
4V4T|1|BA|A|282
4V4T|1|BA|A|283
4V4T|1|BA|U|284
4V4T|1|BA|C|285
4V4T|1|BA|C|286
*
4V4T|1|BA|G|355
4V4T|1|BA|G|356
4V4T|1|BA|A|357
4V4T|1|BA|U|358
4V4T|1|BA|A|359
4V4T|1|BA|G|360
4V4T|1|BA|G|361
4V4T|1|BA|U|362
4V4T|1|BA|G|363
4V4T|1|BA|A|363|||A

Current chains

Chain BA

23S ribosomal RNA

Nearby chains