IL_4V4T_169

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

GGUGUAAGCG*CGUUGAGCC

Length

19 nucleotides

Bulged bases

4V4T|1|BA|U|2849, 4V4T|1|BA|G|2867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|BA|G|2845
4V4T|1|BA|G|2846
4V4T|1|BA|U|2847
4V4T|1|BA|G|2848
4V4T|1|BA|U|2849
4V4T|1|BA|A|2850
4V4T|1|BA|A|2851
4V4T|1|BA|G|2852
4V4T|1|BA|C|2853
4V4T|1|BA|G|2854
*
4V4T|1|BA|C|2863
4V4T|1|BA|G|2864
4V4T|1|BA|U|2865
4V4T|1|BA|U|2866
4V4T|1|BA|G|2867
4V4T|1|BA|A|2868
4V4T|1|BA|G|2869
4V4T|1|BA|C|2870
4V4T|1|BA|C|2871

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19