IL_4V4X_002

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GUG*CGAC

Length

7 nucleotides

Bulged bases

4V4X|1|AA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_002 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.3007

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V4X|1|AA|G|44
4V4X|1|AA|U|45
4V4X|1|AA|G|46
*
4V4X|1|AA|C|395
4V4X|1|AA|G|396
4V4X|1|AA|A|397
4V4X|1|AA|C|398

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AS

30S ribosomal protein S16