IL_4V4X_014

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

4V4X|1|AA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_014 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.1482

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V4X|1|AA|U|367
4V4X|1|AA|U|368
4V4X|1|AA|C|369
*
4V4X|1|AA|G|392
4V4X|1|AA|A|393

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AS

30S ribosomal protein S16