IL_4V4X_017

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V4X|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2151

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V4X|1|AA|G|409
4V4X|1|AA|G|410
4V4X|1|AA|A|411
4V4X|1|AA|A|412
4V4X|1|AA|G|413
4V4X|1|AA|A|414
4V4X|1|AA|A|415
4V4X|1|AA|G|416
*
4V4X|1|AA|U|427
4V4X|1|AA|G|428
4V4X|1|AA|U|429
4V4X|1|AA|A|430
4V4X|1|AA|A|431
4V4X|1|AA|A|432
4V4X|1|AA|C|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S4