IL_4V4X_033

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

4V4X|1|AA|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_033 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.3507

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V4X|1|AA|G|922
4V4X|1|AA|A|923
*
4V4X|1|AA|U|1393
4V4X|1|AA|A|1394
4V4X|1|AA|C|1395

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AH

30S ribosomal protein S5