IL_4V4X_044

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

4V4X|1|AA|A|1130, 4V4X|1|AA|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_044 not in the Motif Atlas

Geometric match to IL_8C3A_042

Geometric discrepancy: 0.3539

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4V4X|1|AA|C|1129
4V4X|1|AA|A|1130
4V4X|1|AA|G|1131
4V4X|1|AA|C|1132
*
4V4X|1|AA|G|1142
4V4X|1|AA|G|1143

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S9