IL_4V4X_050

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GUCAC*GAAGUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_050 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.3956

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V4X|1|AA|G|1405
4V4X|1|AA|U|1406
4V4X|1|AA|C|1407
4V4X|1|AA|A|1408
4V4X|1|AA|C|1409
*
4V4X|1|AA|G|1491
4V4X|1|AA|A|1492
4V4X|1|AA|A|1493
4V4X|1|AA|G|1494
4V4X|1|AA|U|1495
4V4X|1|AA|C|1496

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

Transfer RNA; tRNA

Chain AO

30S ribosomal protein S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA