IL_4V4X_053

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_053 not in the Motif Atlas

Geometric match to IL_3FTM_002

Geometric discrepancy: 0.2366

The information below is about IL_3FTM_002

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4V4X|1|AA|C|1431
4V4X|1|AA|G|1432
4V4X|1|AA|A|1433
4V4X|1|AA|A|1434
4V4X|1|AA|G|1435
*
4V4X|1|AA|C|1466
4V4X|1|AA|G|1467
4V4X|1|AA|A|1468
4V4X|1|AA|G|1469

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AW

30S ribosomal protein S20

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BS

50S ribosomal protein L19