IL_4V4X_066

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CCGAAAC*GAGAUAGCUG

Length

17 nucleotides

Bulged bases

4V4X|1|BA|G|801, 4V4X|1|BA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4X|1|BA|C|672
4V4X|1|BA|C|673
4V4X|1|BA|G|674
4V4X|1|BA|A|675
4V4X|1|BA|A|676
4V4X|1|BA|A|677
4V4X|1|BA|C|678
*
4V4X|1|BA|G|799
4V4X|1|BA|A|800
4V4X|1|BA|G|801
4V4X|1|BA|A|802
4V4X|1|BA|U|803
4V4X|1|BA|A|804
4V4X|1|BA|G|805
4V4X|1|BA|C|806
4V4X|1|BA|U|807
4V4X|1|BA|G|808

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15