3D structure

PDB id
4V4X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Experimental method
X-RAY DIFFRACTION
Resolution
5 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4X_070 not in the Motif Atlas
Homologous match to IL_7A0S_022
Geometric discrepancy: 0.2947
The information below is about IL_7A0S_022
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

4V4X|1|BA|C|837
4V4X|1|BA|C|838
*
4V4X|1|BA|G|940
4V4X|1|BA|A|941
4V4X|1|BA|G|942

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BO
50S ribosomal protein L15

Coloring options:


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