3D structure

PDB id
4V4X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
Experimental method
X-RAY DIFFRACTION
Resolution
5 Å

Loop

Sequence
UCAAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4X_110 not in the Motif Atlas
Homologous match to IL_7A0S_069
Geometric discrepancy: 0.2423
The information below is about IL_7A0S_069
Detailed Annotation
UAA/GAN with extra pair
Broad Annotation
No text annotation
Motif group
IL_89021.2
Basepair signature
cWW-L-R-L-R-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V4X|1|BA|U|1851
4V4X|1|BA|C|1852
4V4X|1|BA|A|1853
4V4X|1|BA|A|1854
4V4X|1|BA|G|1855
*
4V4X|1|BA|C|1887
4V4X|1|BA|G|1888
4V4X|1|BA|A|1889
4V4X|1|BA|A|1890
4V4X|1|BA|G|1891

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AD
Transfer RNA; tRNA

Coloring options:


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