IL_4V4X_110

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_110 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.2423

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V4X|1|BA|U|1851
4V4X|1|BA|C|1852
4V4X|1|BA|A|1853
4V4X|1|BA|A|1854
4V4X|1|BA|G|1855
*
4V4X|1|BA|C|1887
4V4X|1|BA|G|1888
4V4X|1|BA|A|1889
4V4X|1|BA|A|1890
4V4X|1|BA|G|1891

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA