IL_4V4X_110
3D structure
- PDB id
- 4V4X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5 Å
Loop
- Sequence
- UCAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4X_110 not in the Motif Atlas
- Homologous match to IL_7A0S_069
- Geometric discrepancy: 0.2423
- The information below is about IL_7A0S_069
- Detailed Annotation
- UAA/GAN with extra pair
- Broad Annotation
- No text annotation
- Motif group
- IL_89021.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V4X|1|BA|U|1851
4V4X|1|BA|C|1852
4V4X|1|BA|A|1853
4V4X|1|BA|A|1854
4V4X|1|BA|G|1855
*
4V4X|1|BA|C|1887
4V4X|1|BA|G|1888
4V4X|1|BA|A|1889
4V4X|1|BA|A|1890
4V4X|1|BA|G|1891
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AD
- Transfer RNA; tRNA
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