IL_4V4X_134

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

UGAG*CAAGAUGA

Length

12 nucleotides

Bulged bases

4V4X|1|BA|G|2777, 4V4X|1|BA|U|2779, 4V4X|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4X|1|BA|U|2637
4V4X|1|BA|G|2638
4V4X|1|BA|A|2639
4V4X|1|BA|G|2640
*
4V4X|1|BA|C|2774
4V4X|1|BA|A|2775
4V4X|1|BA|A|2776
4V4X|1|BA|G|2777
4V4X|1|BA|A|2778
4V4X|1|BA|U|2779
4V4X|1|BA|G|2780
4V4X|1|BA|A|2781

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L13