IL_4V4X_144

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CCCG*CGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4X_144 not in the Motif Atlas

Homologous match to IL_7A0S_104

Geometric discrepancy: 0.4376

The information below is about IL_7A0S_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.6

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V4X|1|BB|C|30
4V4X|1|BB|C|31
4V4X|1|BB|C|32
4V4X|1|BB|G|33
*
4V4X|1|BB|C|49
4V4X|1|BB|G|50
4V4X|1|BB|G|51
4V4X|1|BB|A|52
4V4X|1|BB|A|53
4V4X|1|BB|G|54

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L5

Chain BR

50S ribosomal protein L18