IL_4V4Y_004

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CCUAAG*UAG

Length

9 nucleotides

Bulged bases

4V4Y|1|AA|C|48, 4V4Y|1|AA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_004 not in the Motif Atlas

Geometric match to IL_5J7L_003

Geometric discrepancy: 0.2769

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V4Y|1|AA|C|47
4V4Y|1|AA|C|48
4V4Y|1|AA|U|49
4V4Y|1|AA|A|50
4V4Y|1|AA|A|51
4V4Y|1|AA|G|52
*
4V4Y|1|AA|U|359
4V4Y|1|AA|A|360
4V4Y|1|AA|G|361

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S12