IL_4V4Y_018

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V4Y|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4Y_018 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2404

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V4Y|1|AA|G|409
4V4Y|1|AA|G|410
4V4Y|1|AA|A|411
4V4Y|1|AA|A|412
4V4Y|1|AA|G|413
4V4Y|1|AA|A|414
4V4Y|1|AA|A|415
4V4Y|1|AA|G|416
*
4V4Y|1|AA|U|427
4V4Y|1|AA|G|428
4V4Y|1|AA|U|429
4V4Y|1|AA|A|430
4V4Y|1|AA|A|431
4V4Y|1|AA|A|432
4V4Y|1|AA|C|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S4